test_brain
with two directories, each containing 2800 imagestest_brain
directory (e.g. using cd
)test_brain
directory)test_brain/ch00
is the signal channel and test_brain/ch01
is the autofluroescence channelcellfinder_output
in the same directory as the test_brain
)psl
, which means that the data origin is the most posterior, superior, left voxel. brainglobe list
. In this case, we want to use a mouse atlas (as that's what our data is), and we'll use the 10um version of the Allen Mouse Brain Atlas​