test_brainwith two directories, each containing 2800 images
test_braindirectory (e.g. using
test_brain/ch00is the signal channel and
test_brain/ch01is the autofluroescence channel
cellfinder_outputin the same directory as the
psl, which means that the data origin is the most posterior, superior, left voxel.
brainglobe list. In this case, we want to use a mouse atlas (as that's what our data is), and we'll use the 10um version of the Allen Mouse Brain Atlas