brainglobe
Search…
About
BrainGlobe help forum
bg-atlasapi
BG-AtlasAPI
Usage
Contributing
Adding a new atlas
API documentation
BrainGlobe's publications
Work using BrainGlobe's tools
GitHub repository
cellfinder
Introduction
Installation
User guide
Tutorial
Troubleshooting
Speeding up cellfinder
Error messages
Using conda
Image definition
Getting in touch
Contributing to cellfinder
Release notes
Citing cellfinder
Misc
GitHub repository
cellfinder-core
Introduction
GitHub repository
cellfinder-napari
Introduction
User guide
GitHub repository
brainreg
Introduction
Installation
User guide
Tutorial
Visualisation
GitHub repository
BRAINREG-NAPARI
Introduction
User guide
Tutorial
brainreg-segment
Introduction
User guide
Applications
GitHub repository
bg-space
BG-Space
Usage
morphapi
Morphapi
Usage
Brainrender
Brainrender
Governance model
Hackathon
Github repository
Powered By GitBook
Troubleshooting
cellfinder is complicated. It will probably go wrong
A section of how to improve cellfinder's performance will be added

Introduction

As cellfinder relies on a number of third party libraries (notably TensorFlow, CUDA and cuDNN) there may be issues while running the software.

Speed

If cellfinder is slow, there is guidance at cellfinder is slow​

Error messages

Some known error messages (and how to fix the underlying issues) can be found at error messages​

Anything else

If you are still having trouble, get in touch​
Previous
Visualising your data in brainrender
Next
Speeding up cellfinder
Last modified 1yr ago
Copy link
Contents
Introduction
Speed
Error messages
Anything else