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bg-atlasapi
BG-AtlasAPI
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cellfinder
Introduction
Installation
User guide
Tutorial
Troubleshooting
Speeding up cellfinder
Error messages
Using conda
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Release notes
Citing cellfinder
Misc
GitHub repository
cellfinder-core
Introduction
GitHub repository
cellfinder-napari
Introduction
User guide
GitHub repository
brainreg
Introduction
Installation
User guide
Tutorial
Visualisation
GitHub repository
BRAINREG-NAPARI
Introduction
User guide
Checking orientation
Tutorial
GitHub repository
brainreg-segment
Introduction
User guide
Applications
GitHub repository
bg-space
BG-Space
Usage
GitHub repository
morphapi
Morphapi
Usage
GitHub repository
Brainrender
Brainrender
GitHub repository
Governance model
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Troubleshooting
cellfinder is complicated. It will probably go wrong
A section of how to improve cellfinder's performance will be added
Introduction
As cellfinder relies on a number of third party libraries (notably
TensorFlow
,
CUDA
and
cuDNN
) there may be issues while running the software.
Speed
If cellfinder is slow, there is guidance at
cellfinder is slow
​
Error messages
Some known error messages (and how to fix the underlying issues) can be found at
error messages
​
Anything else
If you are still having trouble,
get in touch
​
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Speeding up cellfinder
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Outline
Introduction
Speed
Error messages
Anything else