Troubleshooting

cellfinder is complicated. It will probably go wrong

A section of how to improve cellfinder's performance will be added
Introduction
As cellfinder relies on a number of third party libraries (notably TensorFlow, CUDA and cuDNN) there may be issues while running the software.
Speed
If cellfinder is slow, there is guidance at cellfinder is slow​
Error messages
Some known error messages (and how to fix the underlying issues) can be found at error messages​
Anything else
If you are still having trouble, get in touch​

Visualising your data in brainrender

Speeding up cellfinder

Last modified 2yr ago