brainglobe
Search…
About
Help forum
Contributing
Github organisation
bg-atlasapi
BG-AtlasAPI
Usage
Adding a new atlas
API documentation
BrainGlobe's publications
Work using BrainGlobe's tools
GitHub repository
cellfinder
Introduction
Installation
User guide
Tutorial
Troubleshooting
Speeding up cellfinder
Error messages
Using conda
Image definition
Getting in touch
Release notes
Citing cellfinder
Misc
GitHub repository
cellfinder-core
Introduction
GitHub repository
cellfinder-napari
Introduction
User guide
GitHub repository
brainreg
Introduction
Installation
User guide
Tutorial
Visualisation
GitHub repository
BRAINREG-NAPARI
Introduction
User guide
Checking orientation
Tutorial
GitHub repository
brainreg-segment
Introduction
User guide
Applications
GitHub repository
bg-space
BG-Space
Usage
GitHub repository
morphapi
Morphapi
Usage
GitHub repository
Brainrender
Brainrender
GitHub repository
Governance model
Powered By
GitBook
Troubleshooting
cellfinder is complicated. It will probably go wrong
A section of how to improve cellfinder's performance will be added
Introduction
As cellfinder relies on a number of third party libraries (notably
TensorFlow
,
CUDA
and
cuDNN
) there may be issues while running the software.
Speed
If cellfinder is slow, there is guidance at
cellfinder is slow
​
Error messages
Some known error messages (and how to fix the underlying issues) can be found at
error messages
​
Anything else
If you are still having trouble,
get in touch
​
Previous
Visualising your data in brainrender
Next
Speeding up cellfinder
Last modified
1yr ago
Copy link
On this page
Introduction
Speed
Error messages
Anything else