Troubleshooting

cellfinder is complicated. It will probably go wrong

A section of how to improve cellfinder's performance will be added

Introduction

As cellfinder relies on a number of third party libraries (notably TensorFlow, CUDA and cuDNN) there may be issues while running the software.

Speed

If cellfinder is slow, there is guidance at cellfinder is slow

Error messages

Some known error messages (and how to fix the underlying issues) can be found at error messages

Anything else

If you are still having trouble, get in touch