Remember to activate your conda environment before doing anything
Open your terminal, and activate your conda environment
conda activate cellfinder
Then install cellfinder (this could take a few minutes depending on the speed of your network connection).
pip install cellfinder
Download atlas and trained classification models (optional)
When you run cellfinder, it will download the files it needs (atlas, trained machine learning models etc.). If you want to save time later, or you know you won't have an internet connection when you run cellfinder, you can download these in advance. See downloading files for details.