-vflags. These voxel sizes are in microns, and come in the same order as your orientation definition.
stack[0, :, :]with matplotlib or when you open the stack with ImageJ. First dimension is the one that you are slicing, the second the height of the image, and the third the width of the image.
asl). If the first plane was cerebellum, it would be
sar. If the first plane was the base it would be