Setting up a development installation
How to get your machine set up to work on cellfinder
The instructions here are for the cellfinder repository, but the process is similar for all the others (e.g. brainreg).
To set up a development install, please fork the cellfinder repository and then:
Clone your fork
git clone https://github.com/YOUR_USERNAME/cellfindercd cellfinder
Add the cellfinder repository as the upstream
git remote add upstream https://github.com/SainsburyWellcomeCentre/cellfinder
Install an editable, development version of cellfinder
pip install -e .[dev]
Finally, when working on cellfinder, keep your fork up to date
git fetch upstreamgit merge upstream/master