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Setting up a development installation
How to get your machine set up to work on cellfinder
The instructions here are for the cellfinder repository, but the process is similar for all the others (e.g. brainreg).
To set up a development install, please fork the cellfinder repository and then:
Clone your fork
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git clone https://github.com/YOUR_USERNAME/cellfinder
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cd cellfinder
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Add the cellfinder repository as the upstream
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git remote add upstream https://github.com/brainglobe/cellfinder
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Install an editable, development version of cellfinder
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pip install -e .[dev]
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Finally, when working on cellfinder, keep your fork up to date
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git fetch upstream
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git merge upstream/master
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