Registered image- the image used for registration, downsampled to atlas resolution
allen_mouse_25umthe atlas labels, warped to your sample brain
Boundaries- the boundaries of the atlas regions
allen_mouse_10um), then the files can take a little while to load.
napari-brainregalso comes with an additional plugin, for visualising your data in atlas space.
Plugin Call Order
Plugin Sorterwindow, select
select hook...dropdown box
brainreg_read_dir_standard_space(the atlas space viewer plugin) above
brainreg_read_dir(the normal plugin) to ensure that the atlas space plugin is used preferentially.