test_brain
with 270 .tif
imagestest_brain
directory)brainreg_output
in the same directory as the test_brain
)psl
, which means that the data origin is the most posterior, superior, left voxel. For more details see Image definition​brainglobe list
. In this case, we want to use a mouse atlas (as that's what our data is), and we'll use the 50um version of the Allen Mouse Brain Atlas. napari
from the same terminal/command as you ran brainreg (or open a new one and activate your conda environment). You can then drag and drop the brainreg_output
directory into napari, and see the results.