BrainGlobeAtlas
object and list availabe optionsBrainGlobeAtlas
object, we need to instantiate it with the atlas name. The first time we use it, a version of this atlas files will be downloaded from the remote GIN repository and stored on your local machine (by default, in .../Users/username/.brainglobe):show_atlases
function (we need to be online):BrainGlobe
atlasstructure_id_path
key contains a list description of the path in the hierarchy up to a particular region, and can be used for queries on the hierarchy.bg_atlas.get_structure_descendants
and bg_atlas.get_structure_ancestors
methods to explore the hierarchy:annotation == root_id
will be all False).vedo
):meshio
library:BrainGlobeAtlas
BrainGlobeAtlas
API is the simplicity of querying for the identity of the structure or the hemisphere at a given location, either from stack indexes or space coordinates, and even cutting the hierarchy at some higher level: