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BrainGlobe's publications

Publications describing software from the BrainGlobe Suite

BrainGlobe Atlas API: a common interface for neuroanatomical atlases
Link: 10.21105/joss.02668​
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Brainrender.A python based software for visualisation of neuroanatomical and morphological data.
Link: https://doi.org/10.1101/2020.02.23.961748​
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A deep learning algorithm for 3D cell detection in whole mouse brain image datasets
link: https://doi.org/10.1371/journal.pcbi.1009074​
Tools for accurate post hoc determination of marker location within whole-brain microscopy images
Link: https://doi.org/10.1101/2021.05.21.445133​
aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data
Link: https://doi.org/10.1038/ncomms11879​

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Contents

BrainGlobe Atlas API: a common interface for neuroanatomical atlases

Brainrender.A python based software for visualisation of neuroanatomical and morphological data.

A deep learning algorithm for 3D cell detection in whole mouse brain image datasets

Tools for accurate post hoc determination of marker location within whole-brain microscopy images

aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data