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bg-atlasapi
BG-AtlasAPI
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cellfinder
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cellfinder-core
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cellfinder-napari
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brainreg
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BRAINREG-NAPARI
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brainreg-segment
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bg-space
BG-Space
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morphapi
Morphapi
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Brainrender
Brainrender
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BrainGlobe's publications
Publications describing software from the BrainGlobe Suite
BrainGlobe Atlas API: a common interface for neuroanatomical atlases
Link:
10.21105/joss.02668
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Brainrender.A python based software for visualisation of neuroanatomical and morphological data.
Link:
https://doi.org/10.1101/2020.02.23.961748
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A deep learning algorithm for 3D cell detection in whole mouse brain image datasets
link:
https://doi.org/10.1371/journal.pcbi.1009074
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Tools for accurate post hoc determination of marker location within whole-brain microscopy images
Link:
https://doi.org/10.1101/2021.05.21.445133
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aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data
Link:
https://doi.org/10.1038/ncomms11879
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Contents
BrainGlobe Atlas API: a common interface for neuroanatomical atlases
Brainrender.A python based software for visualisation of neuroanatomical and morphological data.
A deep learning algorithm for 3D cell detection in whole mouse brain image datasets
Tools for accurate post hoc determination of marker location within whole-brain microscopy images
aMAP is a validated pipeline for registration and segmentation of high-resolution mouse brain data